I think it is important to use cut paste. What you use is probably not as important. anything from vaseline to aluminum foil electrical tape I see alot of the Asians using around here, all do the same, Protect the new cells that are forming from drying out and causing more die-back. If you have a small cut on a conifer in the growing season, or say a ficus, the tree will probably seal its own wound with sap/resin.
The bacteria thing I don't know about. Seems like the more destructive bacteria are anaerobic, meaning they would actually thrive better in an environment that was sealed (anaerobic=without oxygen).